Data Structures

Here are the data structures with brief descriptions:

CAddress	A datatype for storing a postal address as well as its geographic coordinates if possible
CAllocFailure	A class used for memory allocation failures
CArgsProcessor	An ArgsProcessor is a class to abstract out how a particular BlastTool stores a value when an argument is passed to it
CAsyncSystemBlastTool	A class that will run Blast as an asynchronous system process
CAsyncSystemPolymarkerTool
CAsyncTask	A datatype to use to run tasks asynchronously
CAsyncTaskNode	A datatype to allow storing AsynTasks on a LinkedList
CAsyncTasksManager	A datatype for storing AsyncTasks in a collection
CAsyncTasksManagerEventConsumer	A datatype that has an EventConsumer and a pointer to the AsyncTasksManager that owns it
CBlankRow
CBlastAppParameters	This datatype is used to parse a given ParameterSet in a method suitable for a particular BLAST configuration
CBlastFormatter	This class is for converting the output of a blast job between the available different formats
CBlastServiceData	The configuration data for the Blast Service
CBlastServiceJob	This datatype stores the ServiceJob and its associated BlastTool
CBlastTask	This datatype is used for describing the algorithms that some of the BLAST tools allow the user to choose to optimise the search procedure
CBlastTool	The base class for running Blast
CBlastToolFactory	The base class for generating blast tools
CBlockingFactors
CBooleanParameter
CByteBuffer	A datatype to allow an automatically growing buffer for appending data to
CByteBufferArgsProcessor	An ArgsProcessor that adds all of its values to a given ByteBuffer
CCharParameter
CConnection	The base class for building a Server-Client connection
CCoordinate	A datatype for storing a geographic coordinate
CCountAsyncTask	A datatype for an AsyncTask that has a counter that sends a signal when that counter reaches a given limit
CCountry
CCrop
CCurlTool	A tool for making http(s) requests and responses
CDatabaseInfo	A datatype describing the details of each database available to search against
CDataListNode	A ListNode for LinkedLists that also stores arbitrary blocks of data
CDataResource	A datatype representing a URI
CDiscardRow
CDoubleListNode	A ListNode for LinkedLists that also stores an double value
CDoubleParameter
CDoubleParameterOption
CDoubleParameterOptionNode
CDrmaaBlastTool	A class that will run Blast as a drmaa process
CDrmaaBlastToolFactory	The base class for generating DrmaaBlastTools
CDrmaaServiceJob	A ServiceJob that also has the data for running as Drmaa-based task
CDrmaaTool	A Tool for running Drmaa jobs
CDrmaaToolArgsProcessor	An ArgsProcessor that adds all of its values to a given DrmaaTool
CEventConsumer	An EvenetConsumer is a datatype to allow an object to be notified when an AsyncTask has completed running
CExperimentalAreaPhenotype
CExternalBlastTool	A class that will run Blast using an external application such as blastn rather than calling Blast library routines directly
CExternalBlastToolFactory	The base class for running blast tools as a separate process
CExternalServer	A datatype to allow access to an external Grassroots Server
CExternalServerNode	A datatype for storing ExternalServers in a LinkedList
CField
CFieldNode	A datatype for storing a value as a string along with the datatype to convert it to
CFieldTrial	A datatype that represents a Field Trial that can contain one or more Studies
CFieldTrialNode	A datatype for storing a Field Trial on a list
CFieldTrialServiceData	The configuration data used by the DFW Field Trial Service
CFileInformation	A datatype to hold a collection of metadata about a file
CFileOutputStream	An OutputStream that writes to user-specified files
CGeneBank
CGeocoderTool	A datatype that accesses an external geocoding provider to calculate the geographic data for an Address
CGermplasmServiceData
CGrassrootsServer
CHandler	A Handler is a datatype for accessing data
CHandlerNode	A datatype for storing a Handler on a LinkedList
CHashBucket	A datatype for holding a key-value pair along with the hashed value of the key
CHashTable	A container using HashBuckets to allow for fast lookup of key-value pairs
CImageMetadata
CInstrument
CIntegerObservation
CIntListNode	A ListNode for LinkedLists that also stores an integer value
CIRodsConnection	This is a wrapper which hides the internals of the code and objects needed to access an iRODS system
CIRodsSearch	A set of SearchTerms to use when running a search
CIterator	A datatype for abstracting out the method of moving from one entry in a LinkedList to the next
CJobsManager	A datatype for monitoring ServiceJobs
CJsonNode	A datatype for storing a json_t on a LinkedList
CJSONParameter
CJSONProcessor
CKeyValuePair	A pair of strings
CKeyValuePairNode	A datatype used for storing a KeyValuePair on a LinkedList
CKeywordServiceMatcher	A ServiceMatcher that will find any Service with a keyword parameter
CLinkedList	A doubly-linked list that can be traversed in either direction
CLinkedService	This datatype stores the data needed to get the required information from the output of one Service to act as input for another
CLinkedServiceNode	The datatype to allow the storage of LinkedServices on LinkedLists
CListItem	A doubly-linked node that points to its predecessor and successor
CLocation
CLocationNode
CLuceneDocument	A datatype for holding Lucene Documents
CLuceneFacet
CLuceneFacetNode
CLuceneTool	A Tool for running Lucene jobs
CMappedParameter	This structure is used to store a relationship between a value from the output of running one service to use as an input parameter value for another service
CMappedParameterNode	This datatype allows the storage of MappedParameters on a LinkedList
CMaterial
CMaterialStudyDetails
CMaterialStudyDetailsNode
CMeasuredVariable
CMeasuredVariableNode
CModBrapiConfig	The configuration for the Grassroots BrAPI module
CMongoTool	A MongoTool is a datatype that allows access to the data stored within a MongoDB instance
CNamedParameterType	This is a datatype that stores a read-only c-style string along with a ParameterType
CNameServiceMatcher	A ServiceMatcher that matches a Service by its name
CNominalCOScaleClass
CNumericObservation
CObservation	A datatype for storing a phneotypic observation within an experiment
CObservationNode
COutputStream	An datatype to abstract out the process of writing log and error messages to the appropriate processes and places on a given Server
CPairedService	A datatype for describing a remote Service that can be used in conjunction with a local Service
CPairedServiceNode	A datatype for storing PairedServices on a LinkedList
CParameter	The datatype that stores all of the information about a Parameter
CParameterGroup	A datatype to tell the system that certain parameters should be grouped together in the client's user interface if possible
CParameterGroupNode	A datatype for storing a ParameterGroup on a LinkedList
CParameterNode	A datatype for storing Parameters in a LinkedList
CParameterSet	A set of Parameters along with an optional name and description
CParameterSetNode	A datatype for storing a ParameterSet on a LinkedList
CParentalGenotypeServiceData	The configuration data used by the Parental Genotype Service
CPathogenomicsServiceData	The configuration data used by the Pathogenomics Service
CPermissions
CPermissionsGroup
CPermissionsManager
CPerson
CPersonNode
CPhenotypeStatisticsNode	A datatype for having the statistics of a given Measure Variable for a Study
CPlot
CPlotNode
CPlotsCache
CPlugin	A Plugin is a dynamically-loaded component to provide a piece of functionality
CPluginListNode	A ListNode for LinkedLists that also stores a plugin value
CPluginNameServiceMatcher	A ServiceMatcher that matches a Service by its Plugin name
CPluginOperationNameServiceMatcher	A ServiceMatcher that matches a Service by its Plugin name and an Service name
CPluginValue	A union datatype that abstracts the different types of plugins that are avaialble
CPolymarkerFormatter
CPolymarkerSequence	A datatype that stores the information of sequence data that the PolymarkerService can run with
CPolymarkerServiceData	The ServiceData used for the PolymarkerService
CPolymarkerServiceJob	A datatype for storing a ServiceJob for the PolymarkerService with its extra associated fields
CPolymarkerTool	The base class for the object that will actually run the Polymarker application
CPrimer3Prefs
CProgramme
CProgrammeNode
CProvidersStateTable	This is a datatype that is used to keep track of which servers and services have already been processed when merging services together to present to a server or client
CPThreadNode	Datatype for storing a pthread_t on a LinkedList
CQueryResult	A datatype for accessing a single result of a search on an iRODS server
CQueryResults	A datatype for holding an array of the results of a search on an iRODS server
CReferredService	A datatype which defines an available service, its capabilities and its parameters
CReferredServiceData	The base structure for storing Service configuration data
CReferredServiceNode	A datatype for storing a ReferredService on a LinkedList
CRegExp	The module used for performing regular expressions
CRemoteParameterDetails	This datatype is used to denote that a Parameter is for use on a PairedService
CRemoteParameterDetailsNode	A ListItem for storing RemoteParameterDetails on a LinkedList
CRemoteServiceData	A datatype to facilitate running PairedServices in parallel rather than sequentially which leads to longer waiting times for the caller who is running the Services
CRemoteServiceJob	A datatype describing a ServiceJob that is run on a remote Grassroots Server
CResourceParameter
CResourceServiceMatcher	A ServiceMatcher that matches a Service if it can run on a given Resource
CRow
CRowNode
CRowPhenotype
CRowProcessor
CScaleClass
CSchemaTerm	A datatype for specifying ontological terms as a way to describe the data that each of the Services consumes and produces
CSchemaTermNode	A datatype for storing SchemaTerms in a LinkedList
CSchemaVersion	This is a datatype to store the versioning details for the Grassroots JSON schema that is being used
CSearchHighlighter
CSearchServiceData
CSearchTerm	A datatype for storing the values needed for an iRODS search
CSearchTermNode	A datatype for storing a SearchTerm on a LinkedList
CServersManager	A datatype for monitoring ExternalServers
CService	A datatype which defines an available service, its capabilities and its parameters
CServiceData	A datatype for holding the configuration data for a Service
CServiceJob	A datatype to represent a running task
CServiceJobNode	A datatype used to store a ServiceJob within a ServceJobSet using a LinkedList
CServiceJobSet	A datatype to represent a collection of ServiceJobs
CServiceJobSetIterator	A datatype allowing easy traversal over all of the ServiceJobs within a ServiceJobSet
CServiceMatcher	A datatype used to find any Services that match given criteria
CServiceMetadata	A datatype for describing the type of application that a Service provides
CServiceNode	A datatype for storing Services on a LinkedList
CServicesArray	A datatype for having a set of Services
CSignedIntParameter
CSignedIntParameterOption
CSignedIntParameterOptionNode
CSQLClause	A datatype for storing a clause used to query a database
CSQLClauseList
CSQLClauseNode	A datatype for storing a SQLClause on a LinkedList
CSQLiteColumn	A datatype to model an SQLite column
CSQLiteColumnNode	A datatype for storing a SQLiteColumn on a LinkedList
CSQLiteTool	A SQLiteTool is a datatype that allows access to the data stored within a SQLite instance
CStandardRow
CStatistics
CStatisticsTool
CStringArrayParameter
CStringIntPair	A datatype for holding a key-value pair where the key is a c-style string and the value is an unsigned integer
CStringIntPairArray	A datatype for storing a set of StringIntPairs
CStringListNode	A ListNode for LinkedLists that also stores a string value
CStringObservation
CStringParameter
CStringParameterOption
CStringParameterOptionNode
CStringsArgsProcessor	An ArgsProcessor that adds all of its values to an array of strings
CStudy
CStudyNode
CSyncData	A datatype that allows data to be shared between tasks (e.g
CSystemAsyncTask	A datatype to allow the running of command-line applications in a separate task
CSystemBlastFormatter	This class calls a command line executable to convert a blast job between the available different formats
CSystemBlastTool	A class that will run Blast as a system process
CSystemBlastToolFactory	The base class for generating system blast tools
CTempFile	Create a temporary file to read and write data to
CTemporaryFile
CThreadedBlastTool	A class that will run Blast within a pthread
CTimeArrayParameter
CTimeObservation
CTimeParameter
CTreatment	A treatment defines an experimental process that can be applied
CTreatmentFactor	A TreatmentFactor is a set of values for a Treatment applied to plots within a Study
CTreatmentFactorNode
CTreatmentFactors
CTreatmentFactorValue
CTreatmentFactorValueNode
CTreatmentNode
CTrialDesign
CUnsignedIntParameter
CUnsignedIntParameterOption
CUnsignedIntParameterOptionNode
CUser	A datatype to store user credentials
CUserGroup	A datatype to store user credentials
CUserGroupNode
CUserNode
Cuuid_t
CWebConnection	A Connection that uses http(s) communication
CWebServiceData	The configuration data for a WebService