The ServiceData used for the PolymarkerService. More...

#include <polymarker_service.h>

Collaboration diagram for PolymarkerServiceData:

Data Fields
ServiceData	psd_base_data
	The base ServiceData. More...

PolymarkerToolType	psd_tool_type
	The type of tool that this PolymarkerService will use. More...

const char *	psd_working_dir_s
	The directory where the Polymarker input, output and log files will be stored. More...

const char *	psd_executable_s
	If the system-based PolymarkerTool is to be used, this is the executable that the system-based PolymarkerTool will use. More...

const char *	psd_aligner_s
	Polymarker can use either blast or exonerate as its aligner. More...

const char *	psd_default_primer_config_file_s
	File with preferences to be sent to primer3. More...

const char *	psd_thermodynamic_parameters_path_s
	Path to Primer3 config files. More...

PolymarkerSequence *	psd_index_data_p
	An array of available PolymarkerSequence objects that the PolymarkerService can run against. More...

size_t	psd_index_data_size
	The number of PolymarkerSequence objects stored in psd_index_data_p. More...

AsyncTasksManager *	psd_task_manager_p
	The AsyncTasksManager used for coordinating the PolymarkerServiceJobs being run. More...

Detailed Description

The ServiceData used for the PolymarkerService.

Field Documentation

◆ psd_base_data

ServiceData psd_base_data

The base ServiceData.

◆ psd_tool_type

PolymarkerToolType psd_tool_type

The type of tool that this PolymarkerService will use.

◆ psd_working_dir_s

const char* psd_working_dir_s

The directory where the Polymarker input, output and log files will be stored.

◆ psd_executable_s

const char* psd_executable_s

If the system-based PolymarkerTool is to be used, this is the executable that the system-based PolymarkerTool will use.

◆ psd_aligner_s

const char* psd_aligner_s

Polymarker can use either blast or exonerate as its aligner.

◆ psd_default_primer_config_file_s

const char* psd_default_primer_config_file_s

File with preferences to be sent to primer3.

◆ psd_thermodynamic_parameters_path_s

const char* psd_thermodynamic_parameters_path_s

Path to Primer3 config files.

◆ psd_index_data_p

PolymarkerSequence* psd_index_data_p

An array of available PolymarkerSequence objects that the PolymarkerService can run against.

◆ psd_index_data_size

size_t psd_index_data_size

The number of PolymarkerSequence objects stored in psd_index_data_p.

◆ psd_task_manager_p

AsyncTasksManager* psd_task_manager_p

The AsyncTasksManager used for coordinating the PolymarkerServiceJobs being run.

The documentation for this struct was generated from the following file:

polymarker_service.h

Data Fields