ExternalBlastToolFactory Class Reference
The base class for running blast tools as a separate process. More...
#include <external_blast_tool_factory.hpp>
Inheritance diagram for ExternalBlastToolFactory:
Collaboration diagram for ExternalBlastToolFactory:
Public Member Functions | |
| virtual | ~ExternalBlastToolFactory () |
| The ExternalBlastToolFactory destructor. More... | |
 Public Member Functions inherited from BlastToolFactory | |
| BlastToolFactory (const json_t *service_config_p) | |
| The BlastToolFactory constructor. More... | |
| virtual | ~BlastToolFactory () |
| The BlastToolFactory destructor. More... | |
| virtual const char * | GetName ()=0 |
| Get an identifying name for this BlastToolFactory. More... | |
| virtual BlastTool * | CreateBlastTool (BlastServiceJob *job_p, const char *name_s, const BlastServiceData *data_p)=0 |
| Create a BlastTool. More... | |
| virtual BlastTool * | CreateBlastTool (const json_t *json_p, BlastServiceJob *blast_job_p, BlastServiceData *service_data_p)=0 |
| Create a BlastTool from serialised JSON. More... | |
| virtual Synchronicity | GetToolsSynchronicity () const =0 |
| Are the BlastTools that this BlastToolFactory create able to run asynchronously? More... | |
Protected Member Functions | |
| ExternalBlastToolFactory (const json_t *config_p) | |
| The constructor for SystemBlastToolFactory. More... | |
Protected Attributes | |
| const char * | ebtf_program_name_s |
| The command line executable to use to run blast jobs. More... | |
| Protected Attributes inherited from BlastToolFactory | |
| const json_t * | btf_service_config_p |
| The JSON fragment containing the configuration data for this BlastToolFactory. More... | |
Additional Inherited Members | |
| Static Public Member Functions inherited from BlastToolFactory | |
| static BlastToolFactory * | GetBlastToolFactory (const json_t *service_config_p) |
| Get the BlastToolFactory to use. More... | |
Detailed Description
The base class for running blast tools as a separate process.
Constructor & Destructor Documentation
◆ ~ExternalBlastToolFactory()
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virtual |
The ExternalBlastToolFactory destructor.
◆ ExternalBlastToolFactory()
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protected |
The constructor for SystemBlastToolFactory.
- Parameters
-
config_p The Blast Service configuration from the global server configuration.
Field Documentation
◆ ebtf_program_name_s
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protected |
The command line executable to use to run blast jobs.
The documentation for this class was generated from the following file:
