pathogenomics_service_data.h

Go to the documentation of this file.

/*
** Copyright 2014-2016 The Earlham Institute
** 
** Licensed under the Apache License, Version 2.0 (the "License");
** you may not use this file except in compliance with the License.
** You may obtain a copy of the License at
** 
**     http://www.apache.org/licenses/LICENSE-2.0
** 
** Unless required by applicable law or agreed to in writing, software
** distributed under the License is distributed on an "AS IS" BASIS,
** WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
** See the License for the specific language governing permissions and
** limitations under the License.
*/
 
/*
 * pathogenomics_service_data.h
 *
 *  Created on: 28 Sep 2015
 *      Author: tyrrells
 */
 
#ifndef PATHOGENOMICS_SERVICE_DATA_H_
#define PATHOGENOMICS_SERVICE_DATA_H_
 
#include "jansson.h"
 
#include "service.h"
#include "mongodb_tool.h"
#include "pathogenomics_service_library.h"
 
 
typedef enum
{
  PD_SAMPLE,
  PD_PHENOTYPE,
  PD_GENOTYPE,
  PD_FILES,
  PD_NUM_TYPES
} PathogenomicsData;
 
typedef struct PathogenomicsServiceData PathogenomicsServiceData;
 
struct /*PATHOGENOMICS_SERVICE_LOCAL*/ PathogenomicsServiceData
{
  ServiceData psd_base_data;
 
  MongoTool *psd_tool_p;
 
 
  const char *psd_database_s;
 
  const char *psd_collection_ss [PD_NUM_TYPES];
 
 
  const char *psd_files_download_root_uri_s;
 
  json_int_t psd_default_stage_time;
};
 
 
#endif /* PATHOGENOMICS_SERVICE_DATA_H_ */